iHMP2 Prediabetic Data Download 
Proof of Principle

 

 

 

Study

Patient ID

Data Type

Data Stage

File Type

File Size

Event Series

Metadata

iHMP2

 

WGS

Raw

 

 

1

Host Profile

iHMP2

 

Blood CNV

Raw

txt

 

 

Host Profile

iHMP2

 

Proteomic

Raw

csv

 

 

Host Profile

iHMP2

 

Metabolome

 

 

 

 

Host Profile

iHMP2

 

Autoantibody

 

 

 

1

Host Profile

iHMP2

 

RNA-Seq/Transcriptome

 

 

 

54

Host Profile

iHMP2

 

RNA-Seq/Transcriptome

 

 

 

58b

Host Profile

iHMP2

 

Cytokines

 

txt

 

54 & 58b

Host Profile

iHMP2

 

Methylome

Raw

tar.gz

 

54            

Host Profile

iHMP2

 

Methylome

Raw

tar.gz

 

58b

Host Profile

iHMP2

 

16S – Nasal

Raw

fastq.gz

 

54

Sample 69

Read 1

Read 2

iHMP2

 

16S – Stool

Raw

fastq.gz

 

58

Sample 80

Read 1

Read 2

iHMP2

 

16S – Nasal

Raw

fastq.gz

 

58

Sample 79

Read 1

Read 2

iHMP2

 

16S - Stool

Raw

fastq.gz

 

54

Sample 70

Read 1

Read 2

iHMP2

 

Metatranscriptome

Raw

fastq.gz

 

54

Sample 6

Read 1

Read 2

iHMP2

 

Metatranscriptome

Raw

fastq.gz

 

58b

Sample 11

Read 1

Read 2

iHMP2

 

Metatranscriptome

Raw & Cleaned

fastq.gz

 

54

Sample 6

Read 1

Read 2

Cleaned UnPaired

iHMP2

 

Metatranscriptome

Raw & Cleaned

fastq.gz

 

58b

Sample 11

Read 1

Read 2

Cleaned UnPaired

iHMP2

 

WGS-Nasal

Raw & Cleaned

fastq.gz

 

54

Sample 50

See Below

iHMP2

 

WGS-Stool

Raw

fastq.gz

 

54

Sample 20

See Below

iHMP2

 

WGS-Nasal-Clean

Raw

fastq.gz

 

54

See Below

iHMP2

 

WGS-Stool-Clean

Raw

fastq.gz

 

54

See Below

 

WGS - NASAL - Sample 50 - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L001_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L001_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L002_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L002_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L003_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L003_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L004_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L004_R2_001.fastq.gz

 

WGS - Stool - Sample 20 - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L001_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L001_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L002_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L002_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L003_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L003_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L004_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L004_R2_001.fastq.gz

 

WGS-Clean - NASAL - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_SE_trim.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_1.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_1_single.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_2.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_2_single.fastq.gz

 

WGS-Clean - Stool - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_SE_trim.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_1.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_1_single.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_2.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_2_single.fastq.gz