iHMP2 Prediabetic Data Download
Proof of Principle

Study	Patient ID	Data Type	Data Stage	File Type	File Size	Event Series	Metadata
iHMP2		WGS	Raw			1	Host Profile
iHMP2		Blood CNV	Raw	txt			Host Profile
iHMP2		Proteomic	Raw	csv			Host Profile
iHMP2		Metabolome					Host Profile
iHMP2		Autoantibody				1	Host Profile
iHMP2		RNA-Seq/Transcriptome				54	Host Profile
iHMP2		RNA-Seq/Transcriptome				58b	Host Profile
iHMP2		Cytokines		txt		54 & 58b	Host Profile
iHMP2		Methylome	Raw	tar.gz		54	Host Profile
iHMP2		Methylome	Raw	tar.gz		58b	Host Profile
iHMP2		16S – Nasal	Raw	fastq.gz		54	Sample 69 Read 1 Read 2
iHMP2		16S – Stool	Raw	fastq.gz		58	Sample 80 Read 1 Read 2
iHMP2		16S – Nasal	Raw	fastq.gz		58	Sample 79 Read 1 Read 2
iHMP2		16S - Stool	Raw	fastq.gz		54	Sample 70 Read 1 Read 2
iHMP2		Metatranscriptome	Raw	fastq.gz		54	Sample 6 Read 1 Read 2
iHMP2		Metatranscriptome	Raw	fastq.gz		58b	Sample 11 Read 1 Read 2
iHMP2		Metatranscriptome	Raw & Cleaned	fastq.gz		54	Sample 6 Read 1 Read 2 Cleaned UnPaired
iHMP2		Metatranscriptome	Raw & Cleaned	fastq.gz		58b	Sample 11 Read 1 Read 2 Cleaned UnPaired
iHMP2		WGS-Nasal	Raw & Cleaned	fastq.gz		54	Sample 50 See Below
iHMP2		WGS-Stool	Raw	fastq.gz		54	Sample 20 See Below
iHMP2		WGS-Nasal-Clean	Raw	fastq.gz		54	See Below
iHMP2		WGS-Stool-Clean	Raw	fastq.gz		54	See Below

WGS - NASAL - Sample 50 - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L001_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L001_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L002_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L002_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L003_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L003_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L004_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_NP_54N_S50_L004_R2_001.fastq.gz

WGS - Stool - Sample 20 - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L001_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L001_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L002_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L002_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L003_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L003_R2_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L004_R1_001.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq/HMP2_WGS_ST_54ST_S20_L004_R2_001.fastq.gz

WGS-Clean - NASAL - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_SE_trim.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_1.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_1_single.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_2.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54N_clean_trim_2_single.fastq.gz

WGS-Clean - Stool - 54

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_SE_trim.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_1.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_1_single.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_2.fastq.gz

https://multiomics.jax.org/hmp2/static/data/proof_of_principle/wgs/fastq_cleaned/HMP2_WGS_ST_54ST_clean_trim_2_single.fastq.gz